PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 168aa    MW: 18607 Da    PI: 5.2397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.61.4e-2661092100
          DUF260   2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                     CaaC ++   C+    + Cv+apyfp+++p+kf  v+k+FG+ nv k+l++l ++ +r+ a+++l+yeAear++dP++G +g  + +++ l++lk
  XP_013597302.1   6 CAACEFMTGPCTlgngNACVMAPYFPSTEPEKFDRVNKVFGVVNVYKILSRLeEPWQRQYAVNALCYEAEARIHDPIHGYLGPQMVYNNILNNLK 100
                     ***********8555467**********************************55667************************************** PP

          DUF260  92 aelallkee 100
                      e++++k+e
  XP_013597302.1 101 REIDSAKNE 109
                     ***999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.054110IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-256107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNFAICAACE FMTGPCTLGN GNACVMAPYF PSTEPEKFDR VNKVFGVVNV YKILSRLEEP  60
WQRQYAVNAL CYEAEARIHD PIHGYLGPQM VYNNILNNLK REIDSAKNEL SITMAKKNQL  120
MGLPDVDARR NVDEIVGMRE NDQGDVHRAD GASTSSGPSS GPPNQNQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597302.11e-125PREDICTED: LOB domain-containing protein 35-like
TrEMBLA0A0D3DFG31e-106A0A0D3DFG3_BRAOL; Uncharacterized protein
STRINGBra019364.1-P9e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.19e-30LOB domain-containing protein 35